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Species belonging to selected taxon:

Cynops pyrrhogaster, Ambystoma tigrinum tigrinum



ABOUT THIS RECORD

ID: MNEST009502
species: Cynops pyrrhogaster
miRNA family: miR-2182
source: miRNEST

Taxonomy by NCBI:
Cynops pyrrhogaster Cynops Salamandridae Salamandroidea Caudata Batrachia Amphibia Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ACGCCACATTTCCCGCGCCCG

miRNA*
GGCGGGGGATTCGGCGCTG

mismatches: 4
bulges: 2

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pre-miRNA
CGGTCTTCTGTACGCCACATTTCCCGCGCCCGCCGCCGGGCGGGGGATTCGGCGCTGGGCTCTTC

dot-bracket secondary structure
.(((((......((((....(((((.((((((....)))))))))))...))))..)))))....


SIMILARITIES
miRBase mmu-mir-2182: 0.0000000007

PMRD no hits

microPC no hits
UniProt no hits

RFAM SSU_rRNA_eukarya: 0.00005
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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