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Species belonging to selected taxon:
Populus deltoides
,
Populus euphratica
,
Populus nigra
,
Populus tremula
,
Populus tremula x Populus alba
,
Populus tremula x Populus tremuloides
,
Populus tremuloides
,
Populus trichocarpa x Populus nigra
,
Populus x canadensis
,
Populus trichocarpa
,
Populus trichocarpa x Populus deltoides
ABOUT THIS RECORD
ID:
MNEST045079
species:
Populus deltoides
source:
microPC, original name:
miR159
Taxonomy by NCBI:
Populus deltoides
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTGGATTGAAGGGAGCTCTA
miRNA*
GGGCTCCTTGAAGTCCAATA
mismatches:
3
bulges:
0
View larger
pre-miRNA
A
GGGCTCCTTGAAGTCCAATA
GAGGTTCTTGCTGGGTAGATTAAGCTGCTAAGCTATGGATCCACAGCCCTATCTATCAACTGAAGGATAGGTTTGCGGC
TTGCATATCTCAGGAGCTTTATTGCCTAATGTTAGATCCCTTT
TTGGATTGAAGGGAGCTCTA
dot-bracket secondary structure
(
(((((((((..(((((((.(
((((.(((.(((((((((...(((((.((.((.((((.(.((.(((.(((((((.((....)).))))))).))).)).
.).)))).)).)).)))))..)))))))..)).)))..)))))
)))))))..)))))))))).
SIMILARITIES
miRBase
ptc-MIR159a
:
3e-85
PMRD
ptc-miR159a
:
3e-85
microPC
miR159
:
2e-89
UniProt
no hits
RFAM
MIR159: 2e-81
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
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