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Species belonging to selected taxon:
Populus deltoides
,
Populus euphratica
,
Populus nigra
,
Populus tremula
,
Populus tremula x Populus alba
,
Populus tremula x Populus tremuloides
,
Populus tremuloides
,
Populus trichocarpa x Populus nigra
,
Populus x canadensis
,
Populus trichocarpa
,
Populus trichocarpa x Populus deltoides
ABOUT THIS RECORD
ID:
MNEST045929
species:
Populus deltoides
miRNA family:
MIR166
source:
microPC, original name:
miR166
Taxonomy by NCBI:
Populus deltoides
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCGGACCAGGCTTCATTCC
miRNA*
AATGCTGGCTGGCTCGAAG
mismatches:
5
bulges:
0
View larger
pre-miRNA
GG
AATGCTGGCTGGCTCGAAG
CTTAAGCAAAGAGTATCCTAACATGAAACAACTGTTAAGGCT
TCGGACCAGGCTTCATTCC
dot-bracket secondary structure
((
((((..(.((((..(((((
(((.((((....((.((.......)).))...)))).)))))
)))..)))).)..))))))
SIMILARITIES
miRBase
ptc-MIR166f
:
1e-36
PMRD
ptc-miR166f
:
1e-36
microPC
miR166
:
2e-41
UniProt
no hits
RFAM
mir-166: 9e-26
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
download this record