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Species belonging to selected taxon:

Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Populus trichocarpa, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST002122
species: Populus nigra
miRNA family: MIR159
source: miRNEST

Taxonomy by NCBI:
Populus nigra Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTTGGATTGAAGGGAGCTCTA

miRNA*
GAGCTCCTTGAAGTCCAATAG

mismatches: 3
bulges: 0

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pre-miRNA
GATGAGTGATGGATTGTGGAGTGGAGCTCCTTGAAGTCCAATAGAAGCTCCTGCTGGGTAGATCGAGCTGCTGAGCTATGAATCCCACAGCCCTATCACC
ATCAGTCATTTTGATGGGCCTGCGGCTTGCATATCTCAGGAGCTTTATTACCTAATGTTAGATCTTTTTTTGGATTGAAGGGAGCTCTAAACCTTTGATC
TTTTCAGCC


dot-bracket secondary structure
..((((....((((((.((..(((((((((((..(((((((.(((((.((..(((((((((...(((((.(((((.((((....((.(((.(((((((..
...........))))))).))).))....)))).))))).)))))..)))))))..))..)).))))).)))))))..)))))))))))..))..)))))
).))))...



SIMILARITIES
miRBase ptc-MIR159b: 1e-88

PMRD ptc-miR159b: 1e-88

microPC miR159: 1e-79
UniProt no hits

RFAM MIR159: 1e-76
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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