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Species belonging to selected taxon:

Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Populus trichocarpa, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST002131
species: Populus nigra
miRNA family: MIRf540
source: miRNEST

Taxonomy by NCBI:
Populus nigra Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CTGCATTTGCACCTGCATCTT

miRNA*
GGTGCAGGTGCAGGTGCAGGT

mismatches: 0
bulges: 0

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pre-miRNA
ATCTCATGCATGCCAATATGTTGCCTTTATCTGCATTTGCACCTGCATCTTTTGCGTTTGTTTTGTTTTTGACTCCACAAACAAAATCAAGTTCTGTCGA
TACAGTATGTGGGACAATTAGATATAGAGTGTTAGATATGGAAACTAATAAGCTTAGTTGAGGTGCAGGTGCAGGTGCAGGTGAATGCCATTTTGGTAAT
GTTTTCACT


dot-bracket secondary structure
.......(((((((((.(((..((.(((((((((((((((((((((((((((((.(((((((..(((((((..((((((.((...(((..........))
)...)).))))))...(((.(((((...))))).))).))))))).))))))).)))..)))))))))))))))))))))))))).))))).))))).))
)).......



SIMILARITIES
miRBase ptc-MIR530b: 2e-72

PMRD ptc-miR530b: 2e-72

microPC miR1030: 4e-82
UniProt no hits

RFAM MIR530: 3e-71
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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