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Species belonging to selected taxon:

Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Populus trichocarpa, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST041303
species: Populus trichocarpa
miRNA family: MIR159
source: miRBase, original name: ptc-MIR159e (MI0002199)

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CTTGGGGTGAAGGGAGCTCCT

miRNA*
GAGCTTGCTCACTCCAGATC

mismatches: 2
bulges: 1

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pre-miRNA
ACCATTAAATAGGAGCTTGCTCACTCCAGATCTGAAAGGAGGTGATAGGAAACCACTTCTGCTACTTCATGAATACCCGTGGGTGTGCGCGTAGCCATGG
TGAGCTGCGCAGGCTAAGGGTCTGCATGTGCTAGGAGATGTGGTTGCCTTGATCTTTTTGGTCTTGGGGTGAAGGGAGCTCCTATAGTCCCA


dot-bracket secondary structure
........((((((((((.((((((((((..(..((((((......(((.((((((.(((.(((...((((...((((...(((.(((((((.((....)
)..)).))))).)))..))))...))))...))).))).)))))).)))...))))))..)..)))))))).)).)))))))))).......



SIMILARITIES
miRBase ptc-MIR159f: 0.0000000000002

PMRD ptc-miR159e: 1e-106

microPC miR319: 0.0000006
UniProt no hits

RFAM MIR159: 3e-105

Identical with: ptc-miR159e from PMRD (MNEST051606)

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miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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references

[1] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"




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