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Species belonging to selected taxon:

Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Populus trichocarpa, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST041366
species: Populus trichocarpa
miRNA family: MIR169
source: miRBase, original name: ptc-MIR169l (MI0002262)

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TAGCCAAGGATGACTTGCCTG

miRNA*
GGCAGTCTCCTTGGCTAAG

mismatches: 0
bulges: 2

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pre-miRNA
TCTTGTTTGATAGCCAAGGATGACTTGCCTGCTACATACAAGAGATCATTATGCATAAATAGAACGAAATATGTACATGGTATTAATTAATGCAGTGAAA
ACTCTTGTTTGGTTGCCAGGCAGTCTCCTTGGCTAAGCTGACA


dot-bracket secondary structure
...((((...((((((((((.((((.((((((..((.(((((((.......((((((............))))))(((.(((((....))))).)))...
.))))))).))...).)))))))))))))))))))....))))



SIMILARITIES
miRBase ptc-MIR169j: 0.0000000000001

PMRD ptc-miR169l: 2e-77

microPC miR169: 0.0001
UniProt no hits

RFAM MIR169_5: 3e-76

Identical with: ptc-miR169l from PMRD (MNEST051669)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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references

[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
[2] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"




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