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Species belonging to selected taxon:
Populus deltoides
,
Populus euphratica
,
Populus nigra
,
Populus tremula
,
Populus tremula x Populus alba
,
Populus tremula x Populus tremuloides
,
Populus tremuloides
,
Populus trichocarpa x Populus nigra
,
Populus x canadensis
,
Populus trichocarpa
,
Populus trichocarpa x Populus deltoides
ABOUT THIS RECORD
ID:
MNEST052628
species:
Populus trichocarpa
source:
PMRD, original name:
ptc-miRf10806-akr
Taxonomy by NCBI:
Populus trichocarpa
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GTATTAAGCATGTCTCGATACC
miRNA*
TATCGAGACTTGCTTAATACTT
mismatches:
3
bulges:
0
View larger
pre-miRNA
TGTTGGGATACA
TATCGAGACTTGCTTAATACTT
GCCTTCATCATGGTTTTGGAAACATGGAGATTGGTAAGTTAGCAACATTGGTAA
GTATTAAGCATG
TCTCGATACC
AATCCCAACA
dot-bracket secondary structure
.((((((((...
(((((((((.((((((((((((
(((.((..((((..........))))..))...((......))......)))))
)))))))))).)
))))))))..
.)))))))).
SIMILARITIES
miRBase
no hits
PMRD
ptc-miRf11699-akr
:
8e-64
microPC
no hits
UniProt
no hits
RFAM
snoR71: 0.0000000000001
Identical with:
ptc-miRf10393-akr
from PMRD (
MNEST052215
)
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction:
true miRNA
additional data
download this record