miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Species belonging to selected taxon:
Populus deltoides
,
Populus euphratica
,
Populus nigra
,
Populus tremula
,
Populus tremula x Populus alba
,
Populus tremula x Populus tremuloides
,
Populus tremuloides
,
Populus trichocarpa x Populus nigra
,
Populus x canadensis
,
Populus trichocarpa
,
Populus trichocarpa x Populus deltoides
ABOUT THIS RECORD
ID:
MNEST053232
species:
Populus trichocarpa
source:
PMRD, original name:
ptc-miRf11410-akr
Taxonomy by NCBI:
Populus trichocarpa
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CCGATGGAATTACCGACGGA
miRNA*
CGTCGGTAAATCCGTCGGTA
mismatches:
1
bulges:
0
View larger
pre-miRNA
TTA
CCGATGGAATTACCGACGGA
ATAATTAAAAAATATTAATATTTAATTATC
CGTCGGTAAATCCGTCGGTA
A
dot-bracket secondary structure
.((
((((((((.(((((((((((
.((((((((...........))))))))))
))))))))).))))))))))
.
SIMILARITIES
miRBase
no hits
PMRD
ptc-miRf12454-akr
:
1e-36
microPC
no hits
UniProt
no hits
RFAM
no hits
Identical with:
ptc-miRf12211-akr
from PMRD (
MNEST054033
)
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction:
true miRNA
additional data
download this record