miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Populus trichocarpa, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST002118
species: Populus nigra
miRNA family: MIRf883
source: miRNEST

Taxonomy by NCBI:
Populus nigra Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GGTTGCTCGAAGGGCTCGACA

miRNA*
GTGAGCCCTTCGAACAGCCTG

mismatches: 4
bulges: 0

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pre-miRNA
ATGTTCGGGGCCGTGAGCCCTTCGAACAGCCTGCATCAAAGACATTGGCCTGAGAACAGTAGCCCGACCTAGTATTGGGCTCGCAAGTCCAGTGACCAGG
TTGCTCGAAGGGCTCGACA
CCCGGGCAG


dot-bracket secondary structure
.((((((((....((((((((((((.(((((((..(((..(((....(((((....))).(((((((.......))))))).))..)))...))).))))
))).))))))))))))...
)))))))).



SIMILARITIES
miRBase no hits

PMRD ptc-miRf10547-akr: 3e-60

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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