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Species belonging to selected taxon:

Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Populus trichocarpa, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST051621
species: Populus trichocarpa
miRNA family: MIR164
source: PMRD, original name: ptc-miR164c

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGGAGAAGCAGGGCACGTGCA

miRNA*
CACGTGCTCCCCTTCTCCAAC

mismatches: 2
bulges: 0

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pre-miRNA
TAGCTCTTGCTGGAGAAGCAGGGCACGTGCAAGCTCTCTCCTCAAGCTTTCCTTGCACGTGCTCCCCTTCTCCAACATGGGT

dot-bracket secondary structure
..((((.((.((((((((..(((((((((((((....((.....)).....)))))))))))))..)))))))).)).))))


SIMILARITIES
miRBase ptc-MIR164c: 2e-41

PMRD vvi-miR164a: 0.00000000006

microPC miR164: 0.00001
UniProt no hits

RFAM MIR164: 4e-40

Identical with: ptc-MIR164c from miRBase (MNEST041318)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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references

[1] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"
[2] Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL, Plant Cell. 17:2186-2203(2005)., "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis"




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