miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Populus trichocarpa, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST052224
species: Populus trichocarpa
source: PMRD, original name: ptc-miRf10402-akr

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AAGGGGATCGCCAGATGGGATCTCA

miRNA*
GGATCGCCAGATGGGATCTCAGGTTA

mismatches: 5
bulges: 3

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pre-miRNA
GGTTAAAGGGGATCGCCAGATGGGATCTCAGGTTAGCCCAACCACACACAGGATTTTGGTTCTGGTTAAAGGGGATCGCCAGATGGGATCTCAGGTTAGC
C


dot-bracket secondary structure
((((((..((((((.(((..(((((((((...((((((.(((((............)))))..))))))..)))))).)))..)))))))))...)))))
)



SIMILARITIES
miRBase no hits

PMRD ptc-miRf11720-akr: 1e-52

microPC no hits
UniProt no hits

RFAM no hits

Identical with: ptc-miRf11719-akr from PMRD (MNEST053541)

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
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