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Species belonging to selected taxon:
Salmo salar
,
Oncorhynchus mykiss
,
Oncorhynchus tshawytscha
,
Oncorhynchus nerka
,
Thymallus thymallus
,
Coregonus clupeaformis
,
Salvelinus fontinalis
ABOUT THIS RECORD
ID:
MNEST006835
species:
Salmo salar
miRNA family:
miR-2189
source:
miRNEST
Taxonomy by NCBI:
Salmo salar
Salmo
Salmoninae
Salmonidae
Salmonoidei
Salmoniformes
Protacanthopterygii
Euteleostei
Clupeocephala
Elopocephala
Teleostei
Neopterygii
Actinopteri
Actinopterygii
Euteleostomi
Teleostomi
Gnathostomata
Vertebrata
Craniata
Chordata
Deuterostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGATTGTTTGAATCAGCTGTG
miRNA*
CAGCTGACTCAAACAAGCAAC
mismatches:
2
bulges:
0
View larger
pre-miRNA
GCCCCCCCAGGTGCACGCTTTGGTCTCTGTCCCAGCACCACA
CAGCTGACTCAAACAAGCAAC
TCATCATCAAGCTT
TGATTGTTTGAATCAGCTGTG
CA
GTGCTAGGACAAAAACCAAAACGCGCACCCTAGCAGG
dot-bracket secondary structure
.........(((((.((.((((((...(((((.(((((..((
(((((((.((((((((.(((.
.............)
)).)))))))).)))))))))
..
))))).)))))...)))))).)).)))))........
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record