miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Salmo salar, Oncorhynchus mykiss, Oncorhynchus tshawytscha, Oncorhynchus nerka, Salvelinus fontinalis



ABOUT THIS RECORD

ID: MNEST009839
species: Oncorhynchus nerka
miRNA family: mir-1322
source: miRNEST

Taxonomy by NCBI:
Oncorhynchus nerka Oncorhynchus Salmoninae Salmonidae Salmonoidei Salmoniformes Protacanthopterygii Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GCTGCTGCTGCTGATGGTCTC

miRNA*
GAGCTTTTCTTCAGTGGCAGTGT

mismatches: 3
bulges: 2

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pre-miRNA
ACCACAATGTCGCTGCTGCTGCTGATGGTCTCATCAATGAACTTGAGGAGTACATTACCGAGAGCTTTTCTTCAGTGGCAGTGTTGGAGGGT

dot-bracket secondary structure
(((.(((...(((((((((((..((.((((((...((((.((((...)))).))))...)))).))..))..))))))))))))))...)))


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt sp|A3KPW9|BAG6_DANRE: 0.0004

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record





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