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Species belonging to selected taxon:
Salmo salar
,
Oncorhynchus mykiss
,
Oncorhynchus tshawytscha
,
Oncorhynchus nerka
,
Salvelinus fontinalis
ABOUT THIS RECORD
ID:
MNEST006881
species:
Salmo salar
miRNA family:
mir-129
source:
miRNEST
Taxonomy by NCBI:
Salmo salar
Salmo
Salmoninae
Salmonidae
Salmonoidei
Salmoniformes
Protacanthopterygii
Euteleostei
Clupeocephala
Elopocephala
Teleostei
Neopterygii
Actinopteri
Actinopterygii
Euteleostomi
Teleostomi
Gnathostomata
Vertebrata
Craniata
Chordata
Deuterostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
AAGCCCTTACCCCAAAAAGCAT
miRNA*
CTTTTTGCGGTCTGGGCTTGC
mismatches:
3
bulges:
1
View larger
pre-miRNA
TGGATCTGGACCGATAGATTGTCCGTCACGAAT
CTTTTTGCGGTCTGGGCTTGC
TGTTCATAAATATCAGTCTGGG
AAGCCCTTACCCCAAAAAGCAT
TT
GTGGAGGACTCAGTCGCCGAATTGAATG
dot-bracket secondary structure
..(((.(((...(((.((..((((.((((((((
(((((((.(((..((((((.(
(..................)).
))))))..))).))))))).))
))
)))).)))))).))).))).))).....
SIMILARITIES
miRBase
fru-mir-129-1
:
8e-24
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
mir-129: 9e-27
most similar mature miRNAs
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
additional data
download this record