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Species belonging to selected taxon:

Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Paullinia cupana var. sorbilis, Citrus clementina



ABOUT THIS RECORD

ID: MNEST000374
species: Citrus reticulata
miRNA family: miR168a
source: miRNEST

Taxonomy by NCBI:
Citrus reticulata Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CCCGCCTTGCATCAACTGAAT

miRNA*
 TCGCTTGGTGCAGGTCGGGAA

mismatches: 2
bulges: 0
View larger
pre-miRNA
 ATTCAGTTACCGGCGGTCTCTAATTCGCTTGGTGCAGGTCGGGAACTGATTGGCTAGTTTTTTTTTGAAATTTTTTGACAGCGAGGTGGCGTGTTGTAAT
TGGTCGTCACGTTTAAATTAATGATTGAAAAAAATGCGAATTGGATCCCGCCTTGCATCAACTGAATCGGAGACCGAGGTGAGAGATT

dot-bracket secondary structure
......(((((..((((((((.(((((.((((((((((.(((((.((((((.((....((((((((((.(((.(((((..(((.((((((..........
..)))))).))))))))..)))..)))))))))).)).)))))).))))).)))))))))).))))).)))))))).)))))......


SIMILARITIES
miRBase crt-MIR168: 3e-55

PMRD rco-miR168: 3e-21

microPC miR168: 1e-32		UniProt no hits

RFAM MIR168: 5e-20		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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