miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Species belonging to selected taxon:
Citrus aurantium
,
Citrus reticulata
,
Citrus sinensis
,
Citrus unshiu
,
Paullinia cupana var. sorbilis
,
Citrus clementina
ABOUT THIS RECORD
ID:
MNEST000429
species:
Citrus sinensis
miRNA family:
miR166g
source:
miRNEST
Taxonomy by NCBI:
Citrus sinensis
Citrus
Rutaceae
Sapindales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GGAATGTTGTTTGGCTCGAGG
miRNA*
TCGGACCAGGCTTCATTCCCG
mismatches:
3
bulges:
0
View larger
pre-miRNA
TTTTTTGAGAGGTTATGGTTGATG
GGAATGTTGTTTGGCTCGAGG
GTCATCTAGGTTTTCAAAATTTTCTCGGACTTTCTTTCTTGCTTTTATTTTTCCA
GGAAAATTATGTTATTTGCCTATGTGATC
TCGGACCAGGCTTCATTCCCG
TCAACCGACGGTTTCTCTCTT
dot-bracket secondary structure
......((((((...(((((((((
((((((..((((((.((((((
.((((.(((((...((.((((((((.(((......................))).
)))))))).))......))))).))))))
)))).))))))..))))))))
)))))))......))))))..
SIMILARITIES
miRBase
csi-MIR166b
:
4e-94
PMRD
sbi-miR166a
:
0.0000001
microPC
miR166
:
0.0000001
UniProt
no hits
RFAM
mir-166: 0.000000003
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record