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Species belonging to selected taxon:
Citrus aurantium
,
Citrus reticulata
,
Citrus sinensis
,
Citrus unshiu
,
Paullinia cupana var. sorbilis
,
Citrus clementina
ABOUT THIS RECORD
ID:
MNEST000437
species:
Citrus sinensis
miRNA family:
MIR530
source:
miRNEST
Taxonomy by NCBI:
Citrus sinensis
Citrus
Rutaceae
Sapindales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGCATTTGCACCTGCATCTTG
miRNA*
AGGTGCAGTTGCAAGTGCAGA
mismatches:
1
bulges:
0
View larger
pre-miRNA
TATCCTTTATC
TGCATTTGCACCTGCATCTTG
TTGCGTTATCTGGTTCTGGTTCGTAAAAGCCAAAGCACAAGAAGAGCCAATAGCCGTCGGCAGATATG
GTGGCAGCATGGGGTTATATGCATCA
AGGTGCAGTTGCAAGTGCAGA
TGAATGCC
dot-bracket secondary structure
.....((((((
((((((((((.((((((((((
.(((((..(((.(((.(((((......))))).)))...)))..((((..((((.((((.((....))
.)))).)).)).))))..))))).))
)))))))).))))))))))))
))))....
SIMILARITIES
miRBase
csi-MIR530b
:
5e-84
PMRD
ptc-miRf11519-akr
:
0.000000008
microPC
miR530
:
4e-72
UniProt
no hits
RFAM
MIR530: 0.0000001
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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