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Species belonging to selected taxon:
Citrus aurantium
,
Citrus reticulata
,
Citrus sinensis
,
Citrus unshiu
,
Paullinia cupana var. sorbilis
,
Citrus clementina
ABOUT THIS RECORD
ID:
MNEST044893
species:
Citrus sinensis
source:
microPC, original name:
miR166
Taxonomy by NCBI:
Citrus sinensis
Citrus
Rutaceae
Sapindales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCGGACCAGGCTTCATTCCC
miRNA*
GAATGTTGTCTGGCTCGAGG
mismatches:
4
bulges:
0
View larger
pre-miRNA
GG
GAATGTTGTCTGGCTCGAGG
CCACTAACTAGATCTTTGATTTAATCTCAGTTGATCATATATTTGTTTCATTTTTCTTCCATAAAATTTAATTATATT
GAGATACCCATCATTGATCTTAAGATAATTAAGTTAGTGACG
TCGGACCAGGCTTCATTCCC
dot-bracket secondary structure
((
(((((..((((((..(((.(
.(((((((((((((..((((...((((((((((((..((.((((...................)))).)))))).)))
)))))....))))..)))))...........)))))))).).
)))..))))))..)))))))
SIMILARITIES
miRBase
ctr-MIR166
:
9e-89
PMRD
vvi-miR166e
:
0.0000000005
microPC
miR166
:
9e-89
UniProt
no hits
RFAM
mir-166: 0.0000000006
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
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