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Species belonging to selected taxon:
Citrus aurantium
,
Citrus reticulata
,
Citrus sinensis
,
Citrus unshiu
,
Paullinia cupana var. sorbilis
,
Citrus clementina
ABOUT THIS RECORD
ID:
MNEST045375
species:
Citrus sinensis
source:
microPC, original name:
miR159
Taxonomy by NCBI:
Citrus sinensis
Citrus
Rutaceae
Sapindales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTGGATTGAAGGGAGCTC
miRNA*
GCTCCTTGAAGTCCAAAA
mismatches:
2
bulges:
0
View larger
pre-miRNA
GA
GCTCCTTGAAGTCCAAAA
GAGGTTCTAGCAAGGGTAAATTGAGCTGCTGAGCTATGGATCCCACAGTCCTATGTATCAGATTTTAGGGTTTGTTTCTG
ATGATGGTGATGATAGGCTTGTGGCTTGCATATTTCTGGAGCTTCATTACCCCTTAAGTTTTACCCTTTT
TTGGATTGAAGGGAGCTC
dot-bracket secondary structure
((
(((((((..(((((((((
((((....((((((((..(((.(((((.(.(((.((((.(..((((((.(((((.(((((....((((((.....)))))
)...)))))...))))).))))))..).)))).))).).))))).)))..)))))..)))....))))))
)))))))..)))))))))
SIMILARITIES
miRBase
csi-MIR159
:
3e-92
PMRD
ptc-miRf10271-akr
:
0.0000000000002
microPC
miR159
:
3e-104
UniProt
no hits
RFAM
MIR159: 8e-16
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
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