ABOUT THIS RECORDspecies: Gallus gallus
miRNA family: let-7
source: miRBase, original name: gga-let-7a-2 (MI0001259)
Taxonomy by NCBI:
Gallus gallus Gallus Phasianinae Phasianidae Galliformes Neognathae Aves Coelurosauria Theropoda Saurischia Dinosauria Archosauria Sauria Sauropsida Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAGGTAGTAGGTTGTATAGTT miRNA* CTGTACAACCTCCTAGCTTTCC mismatches: 3 bulges: 0 |
pre-miRNA
AGGTTGAGGTAGTAGGTTGTATAGTTTAGAATTACACCAAGGGAGATAACTGTACAACCTCCTAGCTTTCCT
dot-bracket secondary structure
(((..(((.(((.(((((((((((((.....(..(.....)..)...))))))))))))).))).))).)))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
deep sequencing data evidence
references
[1] McBride D, Carre W, Law A, Clinton M, Unpublished.,
[2] International Chicken Genome Sequencing Consortium, Nature. 432:695-716(2004)., "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution"
[3] Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V, J Virol. 82:4007-4015(2008)., "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs"
AGGTTGAGGTAGTAGGTTGTATAGTTTAGAATTACACCAAGGGAGATAACTGTACAACCTCCTAGCTTTCCT
dot-bracket secondary structure
(((..(((.(((.(((((((((((((.....(..(.....)..)...))))))))))))).))).))).)))
SIMILARITIES| miRBase tgu-let-7a-2: 2e-35 PMRD no hits microPC no hits | UniProt no hits RFAM let-7: 2e-29 |
Identical with: tgu-let-7a-2 from miRBase (MNEST026376) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
deep sequencing data evidence
references
[1] McBride D, Carre W, Law A, Clinton M, Unpublished.,
[2] International Chicken Genome Sequencing Consortium, Nature. 432:695-716(2004)., "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution"
[3] Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V, J Virol. 82:4007-4015(2008)., "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs"
