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Species belonging to selected taxon:

Schistosoma mansoni, Schistosoma japonicum



ABOUT THIS RECORD

ID: MNEST038980
species: Schistosoma japonicum
miRNA family: mir-124
source: miRBase, original name: sja-mir-124 (MI0015292)

Taxonomy by NCBI:
Schistosoma japonicum Schistosoma Schistosomatidae Schistosomatoidea Strigeidida Digenea Trematoda Platyhelminthes Acoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CCATTTTCCGCGATTGCCTTGATTT

miRNA*
AATATTAAGGCACGCGGTGAATGTCA

mismatches: 2
bulges: 5

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pre-miRNA
TATATGTATGCCATTTTCCGCGATTGCCTTGATTTGTTAAAAGAAAATGATTCACAACAAAATATTAAGGCACGCGGTGAATGTCATCCACGGTGC

dot-bracket secondary structure
....((.(((.(((((.(((((..((((((((((((((....(((.....)))..)))))...)))))))))))))).))))).))).))......


SIMILARITIES
miRBase sja-mir-124: 1e-49

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

Identical with: sja-miR-124 from Huang et al. (MNEST044041)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa

references

[1] Wang Z, Xue X, Sun J, Luo R, Xu X, Jiang Y, Zhang Q, Pan W, PLoS Negl Trop Dis. 4:e596(2010)., "An "in-depth" description of the small non-coding RNA population of Schistosoma japonicum schistosomulum"




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