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Species belonging to selected taxon:
Schmidtea mediterranea
ABOUT THIS RECORD
ID:
MNEST039219
species:
Schmidtea mediterranea
source:
miRBase, original name:
sme-mir-2204
(
MI0010937
)
Taxonomy by NCBI:
Schmidtea mediterranea
Schmidtea
Dugesiidae
Paludicola
Tricladida
Seriata
Turbellaria
Platyhelminthes
Acoelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGAAATTAGGACGGAAATTACAC
miRNA*
GTAAACATCCGGACTAAGTTTATA
mismatches:
7
bulges:
1
View larger
pre-miRNA
TAC
TGAAATTAGGACGGAAATTACAC
CAATCTACCAACAACGTTAATTA
GTAAACATCCGGACTAAGTTTATA
CCCAATC
dot-bracket secondary structure
...
((((.((((..((((..((((..
.(((..((.......))..))).
))))...))))..)))).))))..
.......
SIMILARITIES
miRBase
sme-mir-2204
:
4e-40
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
Solexa
references
[
1
] Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR,
RNA. 15:1483-1491(2009).
,
"Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea"