miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Schmidtea mediterranea



ABOUT THIS RECORD

ID: MNEST039223
species: Schmidtea mediterranea
source: miRBase, original name: sme-mir-2206 (MI0010939)

Taxonomy by NCBI:
Schmidtea mediterranea Schmidtea Dugesiidae Paludicola Tricladida Seriata Turbellaria Platyhelminthes Acoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ACCACTGGTGCGATCCTGCC

miRNA*
CAGGCATAGCTAAGTGGTTA

mismatches: 3
bulges: 2

View larger
pre-miRNA
CAGGGCAGGCATAGCTAAGTGGTTACTTCTCACTGGAAAATGGATTTCTAATCATTTGACCACTGGTGCGATCCTGCCTTTTAC

dot-bracket secondary structure
.((((((((.((.((..((((((((........((((((.....))))))......))))))))...)).))))))))))....


SIMILARITIES
miRBase sme-mir-2206: 2e-42

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa

references

[1] Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR, RNA. 15:1483-1491(2009)., "Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea"




Liczniki na strone;