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Species belonging to selected taxon:

Oryzias latipes, Gasterosteus aculeatus, Fundulus heteroclitus, Poecilia reticulata



ABOUT THIS RECORD

ID: MNEST007246
species: Gasterosteus aculeatus
miRNA family: mir-133
source: miRNEST

Taxonomy by NCBI:
Gasterosteus aculeatus Gasterosteus Gasterosteidae Gasterosteiformes Gasterosteiformes/Syngnathiformes group Smegmamorpha Percomorpha Euacanthopterygii Acanthopterygii Holacanthopterygii Euacanthomorpha Acanthomorpha Ctenosquamata Eurypterygii Neoteleostei Neognathi Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TAGCTGGTTGAAGGGGACCAA

miRNA*
GGTTCCGTTTGACCAGCCACG

mismatches: 2
bulges: 0

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pre-miRNA
TCACGGCGCAGTAGCTGGTTGAAGGGGACCAAACCTCACAGAAACACCTGACTTGGTTCCGTTTGACCAGCCACGGCAAGGCG

dot-bracket secondary structure
.......((.((.((((((((((.((((((((...(((..........))).)))))))).)))))))))).)).))......


SIMILARITIES
miRBase dre-mir-133b: 8e-32

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-133: 1e-40
most similar mature miRNAs

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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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