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Species belonging to selected taxon:

Oryzias latipes, Gasterosteus aculeatus, Fundulus heteroclitus, Poecilia reticulata



ABOUT THIS RECORD

ID: MNEST034665
species: Oryzias latipes
miRNA family: mir-430
source: miRBase, original name: ola-mir-430c-3 (MI0013012)

Taxonomy by NCBI:
Oryzias latipes Oryzias Oryziinae Adrianichthyidae Adrianichthyoidei Beloniformes Atherinomorpha Smegmamorpha Percomorpha Euacanthopterygii Acanthopterygii Holacanthopterygii Euacanthomorpha Acanthomorpha Ctenosquamata Eurypterygii Neoteleostei Neognathi Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TAAGTGCTACATGTTGGGGTAG

miRNA*
ACCTTAACATAGGCACTGACT

mismatches: 3
bulges: 1

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pre-miRNA
ATCAGACATTCAGATGACCTTAACATAGGCACTGACTTGAATTTCTTTGCAGTAAGTGCTACATGTTGGGGTAGTCTTTGTGTCTGTGA

dot-bracket secondary structure
..(((((((..((((.((((((((((.((((((.(((((((....)))).))).))))))..)))))))))).))))..)))))))...


SIMILARITIES
miRBase ola-mir-430c-2: 2e-38

PMRD no hits

microPC no hits
UniProt no hits

RFAM miR-430: 1e-25

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: in-situ, Northern

references

[1] Tani S, Kusakabe R, Naruse K, Sakamoto H, Inoue K, Gene. 449:41-49(2010)., "Genomic organization and embryonic expression of miR-430 in medaka (Oryzias latipes): insights into the post-transcriptional gene regulation in early development"




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