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Species belonging to selected taxon:
Nicotiana benthamiana
,
Nicotiana langsdorffii x Nicotiana sanderae
,
Nicotiana tabacum
,
Petunia axillaris subsp. axillaris
,
Solanum habrochaites
,
Solanum lycopersicum
,
Solanum melongena
,
Solanum pennellii
,
Solanum torvum
,
Capsicum annuum
,
Solanum tuberosum
ABOUT THIS RECORD
ID:
MNEST001599
species:
Nicotiana benthamiana
miRNA family:
miR166g
source:
miRNEST
Taxonomy by NCBI:
Nicotiana benthamiana
Nicotiana
Nicotianeae
Nicotianoideae
Solanaceae
Solanales
lamiids
asterids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GGAATGTCGTTTGGCTCGAGG
miRNA*
TCGGACCAGGCTTCATTCCCC
mismatches:
4
bulges:
0
View larger
pre-miRNA
AAGGAAAAAGGAAGCTTTTCTATTGTGG
GGAATGTCGTTTGGCTCGAGG
ATTCTTCAATCTTGATCAAATTCTTACTTTTTTTATAGATCTGTATATCAA
TATATAGAGATCCATAATATTGAATTATGTTTTTGGTATCG
TCGGACCAGGCTTCATTCCCC
TCAAAGATTGCTACCACTCACTCAT
dot-bracket secondary structure
.........((.(((...(((.(((.((
((((((..((((((.((((.(
((...((((....(((..(((((.........((((.(((((.(((((...
.))))).))))).))))....)))))..))).)))).))).
)))).))))))..))))))))
.))))))..))).))..........
SIMILARITIES
miRBase
ath-MIR165b
:
0.000000002
PMRD
ath-miR165b
:
0.000000002
microPC
miR166
:
0.0000000002
UniProt
no hits
RFAM
mir-166: 0.00000005
most similar mature miRNAs
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record