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Species belonging to selected taxon:

Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Petunia axillaris subsp. axillaris, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Capsicum annuum, Solanum tuberosum



ABOUT THIS RECORD

ID: MNEST002666
species: Solanum melongena
miRNA family: MIR172
source: miRNEST

Taxonomy by NCBI:
Solanum melongena Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GAATCTTGATGATGTTGCATC

miRNA*
 TGCAGCATCATCAAGATTCCC

mismatches: 0
bulges: 0
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pre-miRNA
 AGGAGAGTCATATGTTAGATGATGCAGCATCATCAAGATTCCCAAAAGAGAAGAGAAGAGATTTGAACTATATATCCAATATTTATCCTAAATATCTTTA
ATATAACATAATTCCCCCTTCAAGTTTTGTGAATCTTGATGATGTTGCATCCTCAAACACTGACTGATAA

dot-bracket secondary structure
.....(((((..((((.((.(((((((((((((((((((((.(((((..((((.(((......((...(((((.....(((((((...))))))).....
))))).))...)))...))))...))))).))))))))))))))))))))).)).)))).))))).....


SIMILARITIES
miRBase tcc-MIR172c: 0.00000003

PMRD ath-miRf10634-akr: 0.0000005

microPC miR172: 0.00003		UniProt no hits

RFAM mir-172: 0.000003		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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