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Species belonging to selected taxon:
Ipomoea batatas
,
Nicotiana benthamiana
,
Nicotiana langsdorffii x Nicotiana sanderae
,
Nicotiana tabacum
,
Petunia axillaris subsp. axillaris
,
Solanum habrochaites
,
Solanum lycopersicum
,
Solanum melongena
,
Solanum pennellii
,
Solanum torvum
,
Capsicum annuum
,
Solanum tuberosum
,
Ipomoea nil
ABOUT THIS RECORD
ID:
MNEST001278
species:
Ipomoea batatas
miRNA family:
MIR414
source:
miRNEST
Taxonomy by NCBI:
Ipomoea batatas
Ipomoea
Ipomoeeae
Convolvulaceae
Solanales
lamiids
asterids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCATCATCATCATCATCTTTC
miRNA*
ACATTGATGTGATGATGAAG
mismatches:
5
bulges:
1
View larger
pre-miRNA
TGGATGAATCT
TCATCATCATCATCATCTTTC
TCATTGCGCCAACAATAATCCTTCTGATTATTGGACCCTTCAAGTTTAATTCTTCGACCAAANACCCA
CCACCTTTCTCTCTCTGCAGGAAATTCTTGAGGAGTGTCACAGATTCAGAGGCGGGGATTCTTGGGAAAATCTTGTTTTATTGGAGAGAAGTGAAGAATT
TGGAGGCTGAGAAGCTGAGGAAATGGATAGTAAGCAGATTGAGAATGGATTACTATGAAGCTTCCCTTTGTACAACTTCTTTGGTCACTACTTTTGGGCG
CCCTTCAGCATTTCGATTCAGGGATTGTTATGAGT
ACATTGATGTGATGATGAAG
AGTGATAG
dot-bracket secondary structure
........(((
(((((((((.(((((.....(
((((.((.((..((((((((.....))))))))...(((((((((((....((((..((((...((((
...(((.(((((.((((...((.(((((...))))).)).))))...))))).)))......))))(((((...))))).))))...))))....)))))
)))))).(((((.(((((((......(((((((.((.........))..)))))))...((..(((...(((..(((.....)))...)))....))).)
).))))))).)))))......))...)).))))).
....))))))))))))))))
).......
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
Source sequences
download this record