miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Species belonging to selected taxon:
Ipomoea batatas
,
Nicotiana benthamiana
,
Nicotiana langsdorffii x Nicotiana sanderae
,
Nicotiana tabacum
,
Petunia axillaris subsp. axillaris
,
Solanum habrochaites
,
Solanum lycopersicum
,
Solanum melongena
,
Solanum pennellii
,
Solanum torvum
,
Capsicum annuum
,
Solanum tuberosum
,
Ipomoea nil
ABOUT THIS RECORD
ID:
MNEST001892
species:
Petunia axillaris subsp. axillaris
miRNA family:
MIR477
source:
miRNEST
Taxonomy by NCBI:
Petunia axillaris subsp. axillaris
Petunia axillaris
Petunia
Petunioideae
Solanaceae
Solanales
lamiids
asterids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GCTCTCCCTCGAGGGCTTCAT
miRNA*
AGGGCCCTCGAGCTGAGTTT
mismatches:
3
bulges:
1
View larger
pre-miRNA
AGGTAGCTTCTGT
AGGGCCCTCGAGCTGAGTTT
CCAGCAAGAACCGGGGAAGGCCTTTTCTCATCCACATATGTTTCTTGGAACGTGATGGTGGCCGTGG
GGGCAGCACTGCTTTTAACGTAATTGATGACTTTTTTCCCTTCCTTTCTGTCAATCACAACTCCCGGGTATTCAAAAGAAGAAGACCTGAACACTTCTGG
ATGATCCTCAGAGATATAGATTGCTGCTCGAAGTCTTGCTCTAGTGACATAAAATTCTTGACTGGAGAAACCGAACTCATGATCATCACAGATGATGATG
GTACGCGGGCATGGATTGGTTGTGATACCGTTTCTCAGTGCCTTCGTGAGCTTGAGAGCACTTAACTTATCTGGAAACTCCATAGTGAGGATTACGGCTG
GT
GCTCTCCCTCGAGGGCTTCAT
GTTTTGAATC
dot-bracket secondary structure
...........((
.(((((((((((..((((..
(((((....(((.((((.((((.........(((..(((((((....))))))).))).)))).(((
(((((....))))))))..((.((((((.....................)))))).))...)))).)))..((...(((((............))))).)
)(((((((((.(((((..((.((((.(((.(((.(((.(((((((...............)))))))..((((...((((.(((......))).))))))
))(((.(((((((((.((((......))))..)))..)))))).)))))))))))))))).))....)))))(((...)))....)))))))))..))))
).
))))...))))))))))).))
..........
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
Source sequences
download this record