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Species belonging to selected taxon:
Ipomoea batatas
,
Nicotiana benthamiana
,
Nicotiana langsdorffii x Nicotiana sanderae
,
Nicotiana tabacum
,
Petunia axillaris subsp. axillaris
,
Solanum habrochaites
,
Solanum lycopersicum
,
Solanum melongena
,
Solanum pennellii
,
Solanum torvum
,
Capsicum annuum
,
Solanum tuberosum
,
Ipomoea nil
ABOUT THIS RECORD
ID:
MNEST041550
species:
Solanum lycopersicum
source:
miRBase, original name:
sly-MIR1916
(
MI0008351
)
Taxonomy by NCBI:
Solanum lycopersicum
Lycopersicon
Solanum
Solaneae
Solanoideae
Solanaceae
Solanales
lamiids
asterids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
ATTTCACTTAGACACCTCAA
miRNA*
GAAGTGCCTAAGTGAAATTT
mismatches:
2
bulges:
0
View larger
pre-miRNA
GCCTAACTTATTGGTGACCTCTTAAATTTGGCACGAA
ATTTCACTTAGACACCTCAA
GTAAAGTGATGTTCATTTTAGACAGCTCATGTAAGGTCTTGTT
GTGTCATTTTGATACAACAAAACCCTACATGAGGTGTCTAAAATGAACATCGCCTACTT
GAAGTGCCTAAGTGAAATTT
CGTGTCAAGTTTAAAGGATCA
CCAATGAATTAGGC
dot-bracket secondary structure
((((((.(((((((((((((.((((((((((((((((
(((((((((((.(((.((((
(((..(((((((((((((((((((.((((((((.(((.(((((
(((((.....)))))))))).))).)))))))).))))))))))))))))))).)))))
)).))).)))))))))))))
))))))))))))))))).)))
))))))).))))))
SIMILARITIES
miRBase
no hits
PMRD
sly-miR1916
:
1e-119
microPC
no hits
UniProt
no hits
RFAM
no hits
Identical with:
sly-miR1916
from PMRD (
MNEST054563
)
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
454
references
[
1
] Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T,
Genome Res. 18:1602-1609(2008).
,
"Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening"