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Species belonging to selected taxon:
Ipomoea batatas
,
Nicotiana benthamiana
,
Nicotiana langsdorffii x Nicotiana sanderae
,
Nicotiana tabacum
,
Petunia axillaris subsp. axillaris
,
Solanum habrochaites
,
Solanum lycopersicum
,
Solanum melongena
,
Solanum pennellii
,
Solanum torvum
,
Capsicum annuum
,
Solanum tuberosum
,
Ipomoea nil
ABOUT THIS RECORD
ID:
MNEST046441
species:
Solanum lycopersicum
source:
microPC, original name:
miR319
Taxonomy by NCBI:
Solanum lycopersicum
Lycopersicon
Solanum
Solaneae
Solanoideae
Solanaceae
Solanales
lamiids
asterids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTGGATTGAAGGGAGCTC
miRNA*
GCTCCTTGAAGTCCAACA
mismatches:
2
bulges:
0
View larger
pre-miRNA
GA
GCTCCTTGAAGTCCAACA
AAAAATCTAACAGGTTAAATTGAGCTGCTGACCTATGGATTCCTCAGCCCTATCTATTTATGATTTCAAACATATAGATA
GGTTTGTGGGTTTGCATATGTCAGGAGCTTTATTTTACCCTTTGTTTGATCATTTT
TTGGATTGAAGGGAGCTC
dot-bracket secondary structure
((
(((((((..(((((((.(
((..(((.(((((((.((((.(((((.(((((.((((.(..((((((.((((((((..((((........))))))))))
)).))).)))..).)))).))))).))))).)))).)))...)))).)))..))).
)))))))..)))))))))
SIMILARITIES
miRBase
sly-MIR159
:
4e-91
PMRD
sly-miR159
:
4e-91
microPC
miR319
:
7e-96
UniProt
no hits
RFAM
MIR159: 2e-87
Identical with:
miR159
from microPC (
MNEST046340
)
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
download this record