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Species belonging to selected taxon:
Ipomoea batatas
,
Nicotiana benthamiana
,
Nicotiana langsdorffii x Nicotiana sanderae
,
Nicotiana tabacum
,
Petunia axillaris subsp. axillaris
,
Solanum habrochaites
,
Solanum lycopersicum
,
Solanum melongena
,
Solanum pennellii
,
Solanum torvum
,
Capsicum annuum
,
Solanum tuberosum
,
Ipomoea nil
ABOUT THIS RECORD
ID:
MNEST002673
species:
Solanum pennellii
miRNA family:
MIR2911
source:
miRNEST
Taxonomy by NCBI:
Solanum pennellii
Lycopersicon
Solanum
Solaneae
Solanoideae
Solanaceae
Solanales
lamiids
asterids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GGCCGGGGGACGGACTGGGAA
miRNA*
CCCAGTCCCGAACCCGTCGG
mismatches:
5
bulges:
1
View larger
pre-miRNA
TCTGAGGGCTGGGCACGGGGGT
CCCAGTCCCGAACCCGTCGG
CTGTCGGTGGACTGCTCGAGCTGCTCCCGCGGCGAGAGCGGGTCGCCGCGTGCC
GGCC
GGGGGACGGACTGGGAA
CGGTTCCTTCGGGGGCCTT
dot-bracket secondary structure
((((...((...)).))))..(
((((((((....((((((((
(((.((((((.((((((..(((((....)))))..)))))).)))))))).)))
)).)
)))....))))))))).
.((((((....))))))..
SIMILARITIES
miRBase
peu-MIR2911
:
1e-41
PMRD
peu-miR2911
:
1e-41
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
Source sequences
download this record