miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Solanum tuberosum



ABOUT THIS RECORD

ID: MNEST002634
species: Solanum lycopersicum
miRNA family: MIR2004
source: miRNEST

Taxonomy by NCBI:
Solanum lycopersicum Lycopersicon Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CTTGTTTTTATCTTATTTTGA

miRNA*
AAGATATAAGATGCAGATTTTGAA

mismatches: 5
bulges: 1

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pre-miRNA
TAGTGCTGCTGAAGATATAAGATGCAGATTTTGAAGTGAAGGGCAATTGCTATATAGAGCTAGAAGCTTTGATCCATTTGTTCTTCTATTCTTGTTTTTA
TCTTATTTTGA
GTAAGCGAT


dot-bracket secondary structure
...(((((((...((.((((((((.((((...(((..(((((((((.((.....(((((((...)))))))...)).)))))))))..)))..)))).))
)))))).)).)
)).))))..



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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