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Species belonging to selected taxon:
Solanum habrochaites
,
Solanum lycopersicum
,
Solanum melongena
,
Solanum pennellii
,
Solanum torvum
,
Solanum tuberosum
ABOUT THIS RECORD
ID:
MNEST045009
species:
Solanum lycopersicum
miRNA family:
MIR157
source:
microPC, original name:
miR157
Taxonomy by NCBI:
Solanum lycopersicum
Lycopersicon
Solanum
Solaneae
Solanoideae
Solanaceae
Solanales
lamiids
asterids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTGACAGAAGATAGAGAGCAC
miRNA*
GCTCTCTATGCTTCTGTCA
mismatches:
1
bulges:
1
View larger
pre-miRNA
TTGACAGAAGATAGAGAGCAC
TAATGATGATATGCTAATTTCATTCAATTTGGGCAGCAAAAGCATCTCAATTCATTTGT
GCTCTCTATGCTTCTGTCA
dot-bracket secondary structure
.((((((((((((((((((((
.((((((((.(((((.......(((.....))).......))))).)))..))))).))
))))))))).)))))))))
SIMILARITIES
miRBase
sly-MIR156a
:
2e-51
PMRD
sly-miR156a
:
2e-51
microPC
miR157
:
8e-51
UniProt
no hits
RFAM
no hits
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
download this record
deep sequencing data evidence