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Species belonging to selected taxon:
Solanum habrochaites
,
Solanum lycopersicum
,
Solanum melongena
,
Solanum pennellii
,
Solanum torvum
,
Solanum tuberosum
ABOUT THIS RECORD
ID:
MNEST046311
species:
Solanum lycopersicum
source:
microPC, original name:
miR167
Taxonomy by NCBI:
Solanum lycopersicum
Lycopersicon
Solanum
Solaneae
Solanoideae
Solanaceae
Solanales
lamiids
asterids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGAAGCTGCCAGCATGATCT
miRNA*
ATCATGTGGTTGCTTCA
mismatches:
2
bulges:
1
View larger
pre-miRNA
TGAAGCTGCCAGCATGATCT
AAACTTACCTATAAATTTATATTAAGGCAAGATCAG
ATCATGTGGTTGCTTCA
dot-bracket secondary structure
.(((((.((((.((((((((
...(((.(((.(((.......)))))).)))...))
)))))))))).))))).
SIMILARITIES
miRBase
vvi-MIR167e
:
0.00000005
PMRD
vvi-miR167e
:
0.00000005
microPC
miR167
:
5e-36
UniProt
no hits
RFAM
MIR167_1: 0.0000009
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
degradome data
download this record