miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Capsicum annuum, Solanum tuberosum



ABOUT THIS RECORD

ID: MNEST002633
species: Solanum lycopersicum
miRNA family: MIR157
source: miRNEST

Taxonomy by NCBI:
Solanum lycopersicum Lycopersicon Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGACAGAAGATAGAGAGCAC

miRNA*
GCTCTCTATGCTTCTGTCATC

mismatches: 0
bulges: 1

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pre-miRNA
GGAAGAAAGAGTGATTATTGTTGACAGAAGATAGAGAGCACTAATGATGATATGCTAATTTCATTCAATTTGGGCAGCAAAAGCATCTCAATTCATTTGT
GCTCTCTATGCTTCTGTCATC
ACCTTCACCTCTTTCGTA


dot-bracket secondary structure
....((((((((((....((.((((((((((((((((((((.((((((((.(((((.......((((...)))).......))))).)))..))))).))
))))))))).))))))))).)
)...))).)))))))...



SIMILARITIES
miRBase sly-MIR156a: 8e-52

PMRD sly-miR156a: 8e-52

microPC miR157: 3e-51
UniProt no hits

RFAM no hits
most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
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