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Species belonging to selected taxon:

Sorghum propinquum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST042492
species: Sorghum bicolor
miRNA family: MIR156
source: miRBase, original name: sbi-MIR156h (MI0010862)

Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGACAGAAGAGAGTGAGCAC

miRNA*
GCTCACTGCTCTTTCTGTCATC

mismatches: 0
bulges: 2

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pre-miRNA
GTGACAGAAGAGAGTGAGCACACGGCCGGGCGTGACGGCACCGGTCAAGGATGTGCCGTCGCGGCCGCGTGCTCACTGCTCTTTCTGTCATCCG

dot-bracket secondary structure
(((((((((((((((((((((.(((((....((((((((((..(((...)))))))))))))))))).))))))))).))).)))))))))...


SIMILARITIES
miRBase osa-MIR156e: 6e-33

PMRD sbi-miR156h: 2e-48

microPC miR156: 0.0000003
UniProt no hits

RFAM mir-156: 2e-45

Identical with: sbi-miR156h from PMRD (MNEST054400)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare, Nature. 457:551-556(2009)., "The Sorghum bicolor genome and the diversification of grasses"




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