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Species belonging to selected taxon:

Sorghum propinquum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST042501
species: Sorghum bicolor
miRNA family: MIR160
source: miRBase, original name: sbi-MIR160f (MI0010864)

Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGCCTGGCTCCCTGAATGCCA

miRNA*
GCGTTGAGGGAGTCATGCAGG

mismatches: 2
bulges: 0

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pre-miRNA
TGCCTGGCTCCCTGAATGCCATCCGAGAGAAGCAATGCCATCGTGTCCATGGCGTGCCTCCCGGTTGGCGTTGAGGGAGTCATGCAGGTTGCTTGCATTG
CCTCAGCAGC


dot-bracket secondary structure
(((.(((((((((.(((((((.(((.(((..(((.((((((.......)))))))))))).))).))))))).))))))))).))).((((((.((...)
)...))))))



SIMILARITIES
miRBase osa-MIR160f: 0.000000006

PMRD sbi-miR160f: 6e-58

microPC miR160: 0.0003
UniProt no hits

RFAM mir-160: 4e-44

Identical with: sbi-miR160f from PMRD (MNEST054409)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare, Nature. 457:551-556(2009)., "The Sorghum bicolor genome and the diversification of grasses"




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