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Species belonging to selected taxon:

Sorghum propinquum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST042507
species: Sorghum bicolor
miRNA family: MIR164
source: miRBase, original name: sbi-MIR164e (MI0010866)

Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGGAGAAGCAGGGCACGTGCA

miRNA*
CACGTGCTCCCCTTCTCCACC

mismatches: 2
bulges: 0

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pre-miRNA
GTTGGAGAAGCAGGGCACGTGCAGAGACACGCCGGCCGGAGCACGGCCGCCGCCGATAGATCGACCTCGCACTCGCACTCGCACACCAGCTGCGTCTGCG
TGTGGATGAGGTCGAGATCGTCGTCGGTCGAAGCTAGCGAGGAACCTCTTGCTTGTTGCTTCACCCGCTAGCTCCTGCACTGCACGTGCTCCCCTTCTCC
ACC
AT


dot-bracket secondary structure
(.((((((((..((((((((((((.(......).((.(((((..(((((.((.((((...((((((((((((.((((..((((.......))))..))))
.)))..))))))))).)))).)).)))))(((((.(((((((....)))))))....)))))........))))).)).))))))))))))..)))))))
).)
..



SIMILARITIES
miRBase zma-MIR164g: 0.000000000000003

PMRD sbi-miR164e: 3e-114

microPC miR164: 0.0002
UniProt no hits

RFAM MIR164: 5e-113

Identical with: sbi-miR164e from PMRD (MNEST054414)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare, Nature. 457:551-556(2009)., "The Sorghum bicolor genome and the diversification of grasses"




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