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Species belonging to selected taxon:

Sorghum propinquum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST042518
species: Sorghum bicolor
miRNA family: MIR166
source: miRBase, original name: sbi-MIR166k (MI0010870)

Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCGGACCAGGCTTCATTCCT

miRNA*
GAATGGAGGCTGATCCAAGA

mismatches: 5
bulges: 0

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pre-miRNA
GAATGGAGGCTGATCCAAGATCCTCCTCGAGTGCGAAACAAATGCCGTTTTTTTGGTTTTGTGTTTGCTCTCTTGGGGGGTCTCGGACCAGGCTTCATTC
CT
C


dot-bracket secondary structure
((((((((.(((.(((.(((((((((..(((.((((((((((.((((......))))))))).))))).)))..))))))))).))).))).))))))))
..
.



SIMILARITIES
miRBase osa-MIR166c: 0.000001

PMRD sbi-miR166k: 3e-41

microPC miR166: 0.000001
UniProt no hits

RFAM mir-166: 5e-40

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare, Nature. 457:551-556(2009)., "The Sorghum bicolor genome and the diversification of grasses"




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