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Species belonging to selected taxon:

Sorghum propinquum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST042568
species: Sorghum bicolor
miRNA family: MIR394
source: miRBase, original name: sbi-MIR394a (MI0001531)

Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTGGCATTCTGTCCACCTCC

miRNA*
AGGTGGACATACTGCCAATG

mismatches: 2
bulges: 0

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pre-miRNA
CTTTACATACTGAGAGTTCCTTGGCATTCTGTCCACCTCCTTGCCCATCGTCAGATATATGTGTTGCTTTTGGAGGTGGACATACTGCCAATGGAGCTGT
GTAGGCCTCT


dot-bracket secondary structure
.........((((.((((((((((((.(.(((((((((((..((....((.((......))))..))....))))))))))).).)))))).)))))).)
.)))......



SIMILARITIES
miRBase zma-MIR394a: 0.000000000000006

PMRD sbi-miR394a: 6e-58

microPC miR394: 0.0003
UniProt no hits

RFAM MIR394: 1e-50

Identical with: sbi-miR394a from PMRD (MNEST054471)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"




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