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Species belonging to selected taxon:

Sorghum propinquum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST042572
species: Sorghum bicolor
miRNA family: MIR395
source: miRBase, original name: sbi-MIR395c (MI0010890)

Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GTGAAGTGTTTGGGGGAACTC

miRNA*
GTTCCCTACAAGCACTTCACGA

mismatches: 0
bulges: 1

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pre-miRNA
GAGTTCCCTACAAGCACTTCACGAGACCTTGGCTTAATAAAGGGTTGTTTGTGAAGTGTTTGGGGGAACTCTT

dot-bracket secondary structure
(((((((((.((((((((((((((((((((..........))))))..)))))))))))))))))))))))..


SIMILARITIES
miRBase zma-MIR395i: 2e-20

PMRD sbi-miR395g: 2e-19

microPC miR395: 0.000003
UniProt no hits

RFAM mir-395: 8e-35

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare, Nature. 457:551-556(2009)., "The Sorghum bicolor genome and the diversification of grasses"




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