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Species belonging to selected taxon:

Sorghum propinquum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST008491
species: Sorghum bicolor
miRNA family: MIR444
source: miRNEST

Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGCAGTTGTTGCCTCAAGCTT

miRNA*
 GCATGAGGCAGGAACTGCATT

mismatches: 2
bulges: 0
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pre-miRNA
 GGTGGCACCAAGCATGAGGCAGGAACTGCATTACTTGCAAGAAAGTCACAAAATCAATTGCAGACCATACTTGTGGCTTTCTTGCAAGTTGTGCAGTTGT
TGCCTCAAGCTTGCTGCCTC

dot-bracket secondary structure
...((((.(((((.((((((((.((((((((.(((((((((((((((((((...................))))))))))))))))))).)))))))).)
))))))).))))).))))..


SIMILARITIES
miRBase ssp-MIR444b: 3e-48

PMRD tae-miR2024b: 4e-19

microPC miR444: 2e-46		UniProt no hits

RFAM MIR444: 3e-39		most similar mature miRNAs

Identical with: miR444 from microPC (MNEST045278)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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