ABOUT THIS RECORDspecies: Danio rerio
miRNA family: mir-34
source: miRBase, original name: dre-mir-34c (MI0004774)
Taxonomy by NCBI:
Danio rerio Danio Cyprinidae Cyprinoidea Cypriniformes Cypriniphysi Otophysi Ostariophysi Otocephala Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGGCAGTGCAGTTAGTTGATTAC miRNA* AATCACTAACCTCACTACCAGG mismatches: 4 bulges: 1 |
pre-miRNA
TGCTGTGTGGTCACCAGGCAGTGCAGTTAGTTGATTACAATCCATAAAGTAATCACTAACCTCACTACCAGGTGAAGGCTAGTA
dot-bracket secondary structure
(((((.((..(((((.((.((((..((((((.((((((..........))))))))))))..)))).)).)))))..)))))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, in-situ, Northern
references
[1] Kloosterman WP, Steiner FA, Berezikov E, de Bruijn E, van de Belt J, Verheul M, Cuppen E, Plasterk RH, Nucleic Acids Res. 34:2558-2569(2006)., "Cloning and expression of new microRNAs from zebrafish"
TGCTGTGTGGTCACCAGGCAGTGCAGTTAGTTGATTACAATCCATAAAGTAATCACTAACCTCACTACCAGGTGAAGGCTAGTA
dot-bracket secondary structure
(((((.((..(((((.((.((((..((((((.((((((..........))))))))))))..)))).)).)))))..)))))))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, in-situ, Northern
references
[1] Kloosterman WP, Steiner FA, Berezikov E, de Bruijn E, van de Belt J, Verheul M, Cuppen E, Plasterk RH, Nucleic Acids Res. 34:2558-2569(2006)., "Cloning and expression of new microRNAs from zebrafish"
