ABOUT THIS RECORDspecies: Bos taurus
miRNA family: mir-154
source: miRBase, original name: bta-mir-369 (MI0005020)
Taxonomy by NCBI:
Bos taurus Bos Bovinae Bovidae Pecora Ruminantia Cetartiodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AATAATACATGGTTGATCTTT miRNA* AGATCGACCGTGTTATATTCG mismatches: 2 bulges: 0 |
pre-miRNA
TGAAGGGAGATCGACCGTGTTATATTCGCTTTATTGACTTCGAATAATACATGGTTGATCTTTTCTCAG
dot-bracket secondary structure
(((..(((((((((((((((..((((((............))))))..)))))))))))))))..))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP, Physiol Genomics. 29:35-43(2007)., "Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues"
TGAAGGGAGATCGACCGTGTTATATTCGCTTTATTGACTTCGAATAATACATGGTTGATCTTTTCTCAG
dot-bracket secondary structure
(((..(((((((((((((((..((((((............))))))..)))))))))))))))..))).
SIMILARITIES| miRBase mml-mir-369: 1e-33 PMRD no hits microPC no hits | UniProt no hits RFAM mir-154: 3e-25 |
Identical with: ppy-mir-369 from miRBase (MNEST030972) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP, Physiol Genomics. 29:35-43(2007)., "Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues"
