miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Mus musculus, Sus scrofa, Bos taurus, Rattus norvegicus, Xenopus laevis, Gallus gallus, Canis lupus familiaris, Ovis aries, Macaca fascicularis, Anolis carolinensis, Trichosurus vulpecula, Papio anubis, Homo sapiens, Taeniopygia guttata, Peromyscus maniculatus bairdii, Pongo abelii, Ursus americanus, Equus caballus, Oryctolagus cuniculus, Macaca nemestrina, Rana catesbeiana, Cynops pyrrhogaster, Ambystoma tigrinum tigrinum, Cavia porcellus, Bos indicus, Meleagris gallopavo, Lonchura striata domestica, Bos sp., Macropus eugenii, Peromyscus polionotus subgriseus, Capra hircus, Pan troglodytes verus, Macaca mulatta

ABOUT THIS RECORD

ID: MNEST025881
species: Gallus gallus
miRNA family: mir-1
source: miRBase, original name: gga-mir-1b (MI0001254)

Taxonomy by NCBI:
Gallus gallus Gallus Phasianinae Phasianidae Galliformes Neognathae Aves Coelurosauria Theropoda Saurischia Dinosauria Archosauria Sauria Sauropsida Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
TGGAATGTTAAGAAGTATGTA

miRNA*
CATACTTCTTCATATGCCCATA

mismatches: 3
bulges: 1

View larger

pre-miRNA
ACATACTTCTTCATATGCCCATATGGAGTCGGCCGGCGTTATGGAATGTTAAGAAGTATGTATC

dot-bracket secondary structure
(((((((((((.((((..(((((....(((....)))..))))).)))).)))))))))))...

SIMILARITIES

miRBase xla-mir-1b: 0.000003

PMRD no hits

microPC no hits

UniProt no hits

RFAM mir-1: 2e-29

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record

references
[1] International Chicken Genome Sequencing Consortium, Nature. 432:695-716(2004)., "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution"