ABOUT THIS RECORDspecies: Gallus gallus
miRNA family: mir-101
source: miRBase, original name: gga-mir-101 (MI0001270)
Taxonomy by NCBI:
Gallus gallus Gallus Phasianinae Phasianidae Galliformes Neognathae Aves Coelurosauria Theropoda Saurischia Dinosauria Archosauria Sauria Sauropsida Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTACAGTACTGTGATAACTGAA miRNA* CGGTTATCATGGTACCGGTGCTG mismatches: 1 bulges: 1 |
pre-miRNA
ACTATCCTTTTTCGGTTATCATGGTACCGGTGCTGTATACGTGAAAGGTACAGTACTGTGATAACTGAAGAATGGTGGT
dot-bracket secondary structure
((((((.((((((((((((((((((((..(((((............))))).)))))))))))))))))))).))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Solexa
deep sequencing data evidence
references
[1] Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML, Genome Res. 18:957-964(2008)., "A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach"
[2] McBride D, Carre W, Law A, Clinton M, Unpublished.,
[3] Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V, J Virol. 82:4007-4015(2008)., "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs"
ACTATCCTTTTTCGGTTATCATGGTACCGGTGCTGTATACGTGAAAGGTACAGTACTGTGATAACTGAAGAATGGTGGT
dot-bracket secondary structure
((((((.((((((((((((((((((((..(((((............))))).)))))))))))))))))))).))))))
SIMILARITIES| miRBase tgu-mir-101-1: 2e-35 PMRD no hits microPC no hits | UniProt no hits RFAM mir-101: 6e-36 |
Identical with: tgu-mir-101-1 from miRBase (MNEST026442) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Solexa
deep sequencing data evidence
references
[1] Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML, Genome Res. 18:957-964(2008)., "A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach"
[2] McBride D, Carre W, Law A, Clinton M, Unpublished.,
[3] Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V, J Virol. 82:4007-4015(2008)., "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs"
