miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Mus musculus, Sus scrofa, Bos taurus, Rattus norvegicus, Xenopus laevis, Gallus gallus, Canis lupus familiaris, Ovis aries, Macaca fascicularis, Anolis carolinensis, Trichosurus vulpecula, Papio anubis, Homo sapiens, Taeniopygia guttata, Peromyscus maniculatus bairdii, Pongo abelii, Ursus americanus, Equus caballus, Oryctolagus cuniculus, Macaca nemestrina, Rana catesbeiana, Cynops pyrrhogaster, Ambystoma tigrinum tigrinum, Cavia porcellus, Bos indicus, Meleagris gallopavo, Lonchura striata domestica, Bos sp., Macropus eugenii, Peromyscus polionotus subgriseus, Capra hircus, Pan troglodytes verus, Macaca mulatta



ABOUT THIS RECORD

ID: MNEST009147
species: Pongo abelii
miRNA family: mir-1273
source: miRNEST

Taxonomy by NCBI:
Pongo abelii Pongo Ponginae Hominidae Hominoidea Catarrhini Simiiformes Haplorrhini Primates Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GGGCGACAGTGCAAGACTCTG

miRNA*
 GAGCTTGCAGTGAGCCGAG

mismatches: 3
bulges: 2
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pre-miRNA
 ACTCAGGAGGCGGAGCTTGCAGTGAGCCGAGATCGTGCCACTGCACTCCAGCCTGGGCGACAGTGCAAGACTCTGTCTCAAAAA

dot-bracket secondary structure
......(((((((((((((((.((.(((.((...((((....))))......)).)))..)).)))))).))))))))).....


SIMILARITIES
miRBase ppy-mir-1273: 7e-17

PMRD ptc-miRf12524-akr: 0.001

microPC no hits		UniProt sp|Q8WTZ3|YS049_HUMAN: 0.0003

RFAM Metazoa_SRP: 2e-26		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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