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Species belonging to selected taxon:
Theobroma cacao
ABOUT THIS RECORD
ID:
MNEST041095
species:
Theobroma cacao
miRNA family:
MIR166
source:
miRBase, original name:
tcc-MIR166b
(
MI0017468
)
Taxonomy by NCBI:
Theobroma cacao
Theobroma
Byttnerioideae
Malvaceae
Malvales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCGGACCAGGCTTCATTCCC
miRNA*
GAATGTTGTTTGGCTCGAGG
mismatches:
4
bulges:
0
View larger
pre-miRNA
AAAGGAGAAACGGTTGATGG
GAATGTTGTTTGGCTCGAGG
TCATCTAGGTTGATCTTTATTTCCATGAAATTTTCTTGGATTAATTTCATTTTTTTTTTC
CGGGAAAGTTTCTGCAATACATATAGCCCTATATGATC
TCGGACCAGGCTTCATTCCC
GTCAACCAAAACAACTTCCT
dot-bracket secondary structure
..(((((....(((((((((
(((((..((((((..(((((
((((.((((........((((..((.((((((((((((((..((..........))..))
)))))))))))))).))))........)))).))))))
)))..))))))..)))))))
)))))))........)))))
SIMILARITIES
miRBase
csi-MIR166b
:
0.000000000002
PMRD
vvi-miR166h
:
0.0000001
microPC
miR166
:
0.0000006
UniProt
no hits
RFAM
mir-166: 0.000000003
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
references
[
1
] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal,
Nat Genet. 43:101-108(2011).
,
"The genome of Theobroma cacao"